For this selection, the image doesn’t have to be saved onto your computer or a disk. There are several different Bio-Formats commands for importing data into Fiji: In these cases a second dialog will list the images in the ‘database’ prompting you to select which to open. Some image file formats are more akin to databases rather than images (e.g. If Bio-Formats is used, you will be prompted with a big dialog and your preferences remembered.ĭrag and dropping an image file to the Fiji toolbar will effectively open the file the same as the File › Open command. See the list of supported file formats on the Bio-Formats website for the complete list (135 as of this writing). They can be accessed directly via the menu command File › Import › Bio-Formats or indirectly via the File › Open menu command which will use the Bio-Formats plugin if needed. This will import and export a wide number of file formats along with their important metadata. Many more file formats can be imported via Fiji plugins. Files can be also dragged and dropped to the toolbar to open them. JPEG, GIF, BMP, PGM, PNG) as well as those detailed below. The menu command File › Open will open TIFF files and import a number of other common file formats (e.g. The menu command File › Save will save in TIFF format. Built-in formatsįiji primarily uses TIFF as the image file format. Most of the commands listed, particularly Fiji extensions, are also available (via ImageJ’s HandleExtraFileTypes feature) simply by using the File › Open… menu item. If you’d like to help, check out the how to help guide! The File › Import submenu I simply can not see what is a comment and what is active code.Īs said: problem solved by reverting to the content of this page has not been vetted since shifting away from MediaWiki. It looks like these blocks of code were still not executed but my code becomes pretty unreadable by this. Since this afternoon these blocks of code were not “grayed out” anymore as before. When I want to comment out blocks of code I enclose the block like this: /* multiple lines of code here */ I normally use the double forward slash // for commenting out single lines in the code. I just report my experience, hoping that it might contribute to solve the problems: I decided to use the, which solved the problem. I started to see annoying behaviour in the macro editor (using IJ1 macro language). So I have been using the update, untill this afternoon. I have seen the extra command window and a somewhat different list of messages in the console, which I do not understand anyway. Hi all, until now I have not been experiencing problems with the poorly behaving Fiji update. See also: Groovy Shell warning "Could not open/create prefs root node. But still, everyone with an existing Fiji installation bundling Java 1.8.0_172 would continue receiving this error message. Updating the bundled Java to 1.8.0_202 or later would fix the issue. I wonder why it works with the old launcher, though? I thought perhaps the old launcher hacked the registry to avoid the issue, but I couldn’t find any code in the history that does so-only code that queries (but does not modify) the registry. message is not a bug in the launcher-it’s a bug in Java 8. Windows RegCreateKeyEx(.) returned error code 5. Unfortunately, the Could not open/create prefs root node Software\JavaSoft\Prefs at root 0x80000002. We really need to roll the launcher forward soon though, so that we can update the bundled Java to JBRSDK8. Hence, I assume this issue is ok for the moment. I also tried updating another Fiji installation and it doesn’t try to download the “new” exe anymore. I just uploaded the former ImageJ-win64.exe.
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